Package: AlleleShift
Type: Package
Title: Predict and Visualize Population-Level Changes in Allele
        Frequencies in Response to Climate Change
Version: 1.1-3
Date: 2025-10-16
Author: Roeland Kindt [cre, aut] (ORCID:
        <https://orcid.org/0000-0002-7672-0712>)
Authors@R: 
    c(person(given = "Roeland",
             family = "Kindt",
             role = c("cre", "aut"),
             email = "RoelandCEKindt@gmail.com",
             comment = c(ORCID = "0000-0002-7672-0712")))
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Description: Methods (<doi:10.7717/peerj.11534>) are provided of
        calibrating and predicting shifts in allele frequencies through
        redundancy analysis ('vegan::rda()') and generalized additive
        models ('mgcv::gam()'). Visualization functions for predicted
        changes in allele frequencies include 'shift.dot.ggplot()',
        'shift.pie.ggplot()', 'shift.moon.ggplot()',
        'shift.waffle.ggplot()' and 'shift.surf.ggplot()' that are made
        with input data sets that are prepared by helper functions for
        each visualization method. Examples in the documentation show
        how to prepare animated climate change graphics through a time
        series with the 'gganimate' package. Function 'amova.rda()'
        shows how Analysis of Molecular Variance can be directly
        conducted with the results from redundancy analysis.
License: GPL-3
Imports: vegan (>= 2.6-4), BiodiversityR (>= 2.15-4), adegenet
Depends: R (>= 4.1.0)
Suggests: poppr, mgcv, dplyr, ggplot2, GGally, ggforce, ggrepel, ggsci,
        gggibbous, gganimate, patchwork
Packaged: 2026-10-12 12:10:43 UTC; root
NeedsCompilation: no
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libuv1-dev
        libxml2-dev tcl tk tk-dev tk-table libx11-dev zlib1g-dev
Repository: https://roelandkindt.r-universe.dev
Date/Publication: 2025-10-16 07:20:02 UTC
RemoteUrl: https://github.com/cran/AlleleShift
RemoteRef: HEAD
RemoteSha: 2c166ce26b5abf497ff544509fccdfc7a6773787